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Figure0

DEPENDENCY

this is Ets1 DEPENDENCY package codes

Figure1

1B

R scripts for PCA analysis

1C

R scripts for analysis of DEGs distribution

1D

R scripts for analysis of DEA about GO ORA

1E

R scripts for analysis of DEA about GSEA

1I

R scripts for analysis of gene regulatory element distributions

Figure2

2B

R scripts for analysis of histone modification at A/B compartments

2C

R scripts for interation matrix of GM & DM

2D

R scripts for AB compartment distribution at GM and OM

2E

R scripts for analysis of A/B compartments dynamics at differentiate stage

2F-G

R scripts for ORA of genes at shifted compartments

Figure3

3A

R scripts for analysis of dynamics of A/B compartments with osteogenic genes

3B-C

R scripts for analysis of H3K27ac level at A/B compartments with osteogenic genes

3D

R scripts for analysis of histone modification at chr5

3E

R scripts for analysis of histone modification at chr15

3F

R scripts for analysis of histone modification with A/B compartments dynamics

Figure4

4A

R scripts for analysis of finding pionner factors

4B

R scripts for showing chromatin accessibility and TFBS for TF

4C

R scripts for analysis about dynamics of chromatin accessibility with Ets1 binding site

Figure5

5A

R scripts for analysis of p300 binding distribution where Ets1 binds

5B

R scripts for analysis of A/B compartments dynamics at Ets1 & p300 binding site

5C-D

R scripts for analysis of A/B compartments with histone modification

5E

R scripts for analysis of A/B compartment dynamics with clusters

5F

R scripts for analysis of A/B compartments signal level for each cluster

5G

R scripts for analysis of Ets1 & p300 signal about clusters